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make needed changes in the new linux pyinst bundle

this ticket is to gather needed changes in the new bundles produced by pyinstaller.

  • We probably could hide all the dependencies in a child folder.
  • We also need to include the helper files.
  • any config etc needed by tuf?

something else?

(from redmine: created on 2015-07-24, relates #7291 (closed), relates #7163 (closed), relates #7316 (closed), relates #7342 (closed), relates #7393 (closed), relates #7400 (closed))